GgaEX6017120 @ galGal4
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NF56]
Coordinates
chr19:4170676-4171292:-
Coord C1 exon
chr19:4171228-4171292
Coord A exon
chr19:4170938-4171050
Coord C2 exon
chr19:4170676-4170862
Length
113 bp
Sequences
Splice sites
3' ss Seq
TGCTGTGGTCCCCTGGGCAGGTG
3' ss Score
9.21
5' ss Seq
TGGGTAAGG
5' ss Score
9.08
Exon sequences
Seq C1 exon
GTGAACCCAACACTTTGTTCCGGAGCAACTCCCTGGCCTCAAAGTCAATGGAGTCTTTCCTCAAG
Seq A exon
GTGACAGGGATGCAGTACCTGCATGCGGTGCTGGGGCCCACCATCTCCCGGGTGTTTGAGGAGAAGAAGTATGTGGAGCTGGACCCCAGCAAGGTGGAGATCAAGGACGTTGG
Seq C2 exon
GTGCTCGGGGCTGCACCGGGTTCAGACAGAGAGTGAGGTGATGGAGCAGGGCCGCCAGCTCCTCCAGTCCTACCTTGGGGAGCTGCTGGATGCCATCGGCAAGTCAGCTCCTACCTGTCCTCCTGTCATCCGTGCCGCTTTCCGGCAGCTCTTCCAGCGCGTTGGGGAGCGCTTCCCCCAGCATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001876-'15-15,'15-14,17-15=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0061614=RasGAP=FE(11.2=100)
A:
PF0061614=RasGAP=FE(19.7=100)
C2:
PF0061614=RasGAP=FE(33.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCCAACACTTTGTTCCGGAG
R:
CTGATGCTGGGGGAAGCG
Band lengths:
248-361
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]