DreEX0061379 @ danRer10
Exon Skipping
Gene
ENSDARG00000044179 | rbms2a
Description
RNA binding motif, single stranded interacting protein 2a [Source:ZFIN;Acc:ZDB-GENE-030912-2]
Coordinates
chr11:1900542-1906207:+
Coord C1 exon
chr11:1900542-1900600
Coord A exon
chr11:1902063-1902154
Coord C2 exon
chr11:1906050-1906207
Length
92 bp
Sequences
Splice sites
3' ss Seq
GTGTTTGTGTGTGTGTTTAGGTT
3' ss Score
11.24
5' ss Seq
AAAGTAAGA
5' ss Score
6.91
Exon sequences
Seq C1 exon
GTATGGAAAGATCGTGTCCACCAAGGCCATTCTGGATAAAACTACCAACAAATGCAAAG
Seq A exon
GTTATGGCTTTGTGGATTTCGACAGTCCTGCAGCAGCACAGAAGGCCGTGACCGCGCTGAAGTCCACCGGTGTTCAAGCTCAAATGGCCAAA
Seq C2 exon
CAACAGGAGCAGGATCCCACAAACCTGTACATCTCCAATCTGCCGGTGTCGATGGACGAGCAGGAGCTGGAGGCCATGCTGAAGTCTTTCGGCCAGGTGATCTCCACACGCATCCTGCGAGACGCTAACGGCACAAGCAGAGGAGTGGGCTTCGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000044179-'4-4,'4-3,5-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.226 C2=0.283
Domain overlap (PFAM):
C1:
PF0007617=RRM_1=FE(29.4=100)
A:
PF0007617=RRM_1=PD(39.7=87.1)
C2:
PF0007617=RRM_1=PU(65.7=83.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAGATCGTGTCCACCAAGGC
R:
GATGCGTGTGGAGATCACCTG
Band lengths:
167-259
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]