GgaEX1002585 @ galGal4
Exon Skipping
Description
NA
Coordinates
chr2:39870255-40039399:+
Coord C1 exon
chr2:39870255-39870313
Coord A exon
chr2:39931933-39932024
Coord C2 exon
chr2:40039242-40039399
Length
92 bp
Sequences
Splice sites
3' ss Seq
ATCTATTGTTTATTTTTTAGGTT
3' ss Score
10.44
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
Exon sequences
Seq C1 exon
GTATGGGAAAATTGTATCAACAAAGGCAATTCTTGACAAAAACACAAATCAATGCAAAG
Seq A exon
GTTATGGTTTTGTAGATTTTGACAGCCCGGCAGCAGCACAGAAAGCAGTAGCATCTCTCAAAGCAAATGGCGTGCAAGCGCAGATGGCAAAG
Seq C2 exon
CAACAAGAGCAAGATCCCACAAATCTATACATCTCAAATTTACCTGTTTCCATGGATGAGCAGGAACTGGAGAACATGCTGAAACCTTTTGGACATGTCATTTCCACCAGAATATTAAGAGACGCAAATGGAGTCAGCAGAGGAGTTGGCTTTGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011439-'3-9,'3-6,5-9
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=1.000 C2=0.415
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF0007617=RRM_1=PU(65.7=83.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TCAACAAAGGCAATTCTTGACA
R:
CTGCTGACTCCATTTGCGTCT
Band lengths:
183-275
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]