MmuEX0039207 @ mm9
Exon Skipping
Gene
ENSMUSG00000039607 | Rbms3
Description
RNA binding motif, single stranded interacting protein [Source:MGI Symbol;Acc:MGI:2444477]
Coordinates
chr9:116731857-116965913:-
Coord C1 exon
chr9:116965855-116965913
Coord A exon
chr9:116868586-116868677
Coord C2 exon
chr9:116731857-116732014
Length
92 bp
Sequences
Splice sites
3' ss Seq
CAGATTTTGTATTTTGGCAGGTT
3' ss Score
6.05
5' ss Seq
AAGGTAAGC
5' ss Score
10.22
Exon sequences
Seq C1 exon
GTATGGAAAAATCGTATCCACAAAGGCAATTCTTGACAAGAATACGAATCAGTGCAAAG
Seq A exon
GTTATGGTTTTGTAGATTTTGATAGTCCTGCAGCCGCACAGAAAGCAGTGGCGTCCTTGAAGGCAAATGGCGTGCAAGCACAGATGGCCAAG
Seq C2 exon
CAACAAGAGCAAGACCCTACGAATCTATACATCTCAAACCTTCCCATCTCCATGGATGAGCAGGAGCTGGAGAACATGCTAAAGCCCTTTGGACACGTGATATCCACCAGAATCCTGAGGGATGCTAACGGAGTCAGCAGGGGCGTTGGCTTTGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000039607-'6-10,'6-7,7-10
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.226 C2=0.330
Domain overlap (PFAM):
C1:
PF0007617=RRM_1=FE(30.3=100)
A:
PF0007617=RRM_1=PD(37.9=80.6)
C2:
PF0007617=RRM_1=PU(65.7=83.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCACAAAGGCAATTCTTGACA
R:
ACTCCGTTAGCATCCCTCAGG
Band lengths:
177-269
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: