BtaEX0029982 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000044062 | RBMS3
Description
RNA binding motif, single stranded interacting protein 3 [Source:HGNC Symbol;Acc:HGNC:13427]
Coordinates
chr22:4142670-4400149:+
Coord C1 exon
chr22:4142670-4142728
Coord A exon
chr22:4242263-4242354
Coord C2 exon
chr22:4399992-4400149
Length
92 bp
Sequences
Splice sites
3' ss Seq
GGGGCTTTGTGTTTTCACAGGGT
3' ss Score
7.76
5' ss Seq
AAGGTAGGA
5' ss Score
9.45
Exon sequences
Seq C1 exon
GTATGGAAAAATCGTATCCACAAAGGCAATCCTTGACAAAAACACAAATCAATGCAAAG
Seq A exon
GGTATGGTTTTGTAGATTTCGACAGCCCAGCAGCTGCACAGAAAGCAGTAGCATCTCTCAAGGCAAATGGCGTGCAGGCACAGATGGCCAAG
Seq C2 exon
CAACAAGAGCAAGACCCAACAAACCTTTACATCTCAAATCTCCCCATTTCTATGGACGAGCAGGAACTTGAGAATATGCTGAAACCCTTTGGACATGTCATTTCCACAAGGATACTAAGAGATGCTAATGGAGTCAGCAGAGGCGTTGGCTTTGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000044062-'2-5,'2-3,4-5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.355 C2=0.302
Domain overlap (PFAM):
C1:
PF0007617=RRM_1=FE(30.3=100)
A:
PF0007617=RRM_1=PD(37.9=80.6)
C2:
PF0007617=RRM_1=PU(65.7=83.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
AGGCAATCCTTGACAAAAACACA
R:
GCCTCTGCTGACTCCATTAGC
Band lengths:
180-272
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development