RnoEX0074762 @ rn6
Exon Skipping
Gene
ENSRNOG00000025881 | Rbms3
Description
RNA binding motif, single stranded interacting protein 3 [Source:RGD Symbol;Acc:1588240]
Coordinates
chr8:125086581-125328654:-
Coord C1 exon
chr8:125328596-125328654
Coord A exon
chr8:125237363-125237454
Coord C2 exon
chr8:125086581-125086738
Length
92 bp
Sequences
Splice sites
3' ss Seq
CAGATTTTGTATTTTGGCAGGTT
3' ss Score
6.05
5' ss Seq
AAGGTAAGC
5' ss Score
10.22
Exon sequences
Seq C1 exon
GTACGGAAAAATCGTATCCACGAAGGCAATTCTTGACAAGAATACGAATCAATGCAAAG
Seq A exon
GTTATGGTTTTGTAGATTTTGATAGTCCGGCAGCCGCACAGAAAGCAGTGGCATCCTTGAAGGCAAATGGTGTGCAAGCACAGATGGCCAAG
Seq C2 exon
CAACAAGAGCAAGACCCTACGAACCTATACATCTCAAACCTCCCCATCTCCATGGATGAGCAGGAGCTGGAGAATATGCTAAAGCCCTTTGGACACGTGATATCCACCAGAATCCTGAGAGATGCCAACGGCGTCAGCAGAGGCGTAGGCTTTGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000025881-'13-16,'13-14,15-16
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.276 C2=0.310
Domain overlap (PFAM):
C1:
PF0007617=RRM_1=FE(30.3=100)
A:
PF0007617=RRM_1=PD(37.9=80.6)
C2:
PF0007617=RRM_1=PU(65.7=83.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCACGAAGGCAATTCTTGACA
R:
CCGTTGGCATCTCTCAGGATT
Band lengths:
174-266
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]