GgaEX1002585 @ galGal3
Exon Skipping
Gene
ENSGALG00000011439 | RBMS3
Description
NA
Coordinates
chr2:39289902-39459046:+
Coord C1 exon
chr2:39289902-39289960
Coord A exon
chr2:39351580-39351671
Coord C2 exon
chr2:39458889-39459046
Length
92 bp
Sequences
Splice sites
3' ss Seq
ATCTATTGTTTATTTTTTAGGTT
3' ss Score
10.44
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
Exon sequences
Seq C1 exon
GTATGGGAAAATTGTATCAACAAAGGCAATTCTTGACAAAAACACAAATCAATGCAAAG
Seq A exon
GTTATGGTTTTGTAGATTTTGACAGCCCGGCAGCAGCACAGAAAGCAGTAGCATCTCTCAAAGCAAATGGCGTGCAAGCGCAGATGGCAAAG
Seq C2 exon
CAACAAGAGCAAGATCCCACAAATCTATACATCTCAAATTTACCTGTTTCCATGGATGAGCAGGAACTGGAGAACATGCTGAAACCTTTTGGACATGTCATTTCCACCAGAATATTAAGAGACGCAAATGGAGTCAGCAGAGGAGTTGGCTTTGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011439-'2-5,'2-4,3-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.317 C2=0.302
Domain overlap (PFAM):
C1:
PF0007617=RRM_1=FE(30.3=100)
A:
PF0007617=RRM_1=PD(37.9=80.6)
C2:
PF0007617=RRM_1=PU(65.7=83.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TCAACAAAGGCAATTCTTGACA
R:
CTGCTGACTCCATTTGCGTCT
Band lengths:
183-275
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]