HsaEX6054847 @ hg38
Exon Skipping
Gene
ENSG00000144642 | RBMS3
Description
RNA binding motif single stranded interacting protein 3 [Source:HGNC Symbol;Acc:HGNC:13427]
Coordinates
chr3:29488441-29739877:+
Coord C1 exon
chr3:29488441-29488499
Coord A exon
chr3:29587114-29587205
Coord C2 exon
chr3:29739720-29739877
Length
92 bp
Sequences
Splice sites
3' ss Seq
GGGATTTTGTGTTTTCACAGGTT
3' ss Score
8.34
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
Exon sequences
Seq C1 exon
GTATGGAAAAATTGTATCTACAAAGGCAATTCTTGACAAAAACACAAATCAGTGCAAAG
Seq A exon
GTTATGGTTTTGTAGATTTTGACAGTCCTGCAGCCGCACAGAAAGCGGTAGCATCTCTCAAGGCAAATGGCGTGCAGGCACAGATGGCTAAG
Seq C2 exon
CAACAAGAGCAAGACCCAACAAACCTATACATCTCAAATCTCCCCATTTCTATGGATGAGCAGGAGCTTGAGAATATGCTGAAACCCTTTGGACATGTCATTTCCACAAGAATACTAAGAGACGCTAATGGAGTCAGCAGAGGTGTTGGCTTTGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000144642-'33-54,'33-45,37-54=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.324 C2=0.311
Domain overlap (PFAM):
C1:
PF0007617=RRM_1=FE(30.3=100)
A:
PF0007617=RRM_1=PD(37.9=80.6)
C2:
PF0007617=RRM_1=PU(65.7=83.0)
Main Skipping Isoform:
ENST00000636680fB5829
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGTCTGTTATTGGATTGCAGA
R:
AAAAACAAATCGGGGCCCC
Band lengths:
178-270
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains