DreEX0061775 @ danRer10
Exon Skipping
Gene
ENSDARG00000042833 | rffl
Description
ring finger and FYVE-like domain containing E3 ubiquitin protein ligase [Source:ZFIN;Acc:ZDB-GENE-040426-2274]
Coordinates
chr15:4562553-4576930:-
Coord C1 exon
chr15:4576742-4576930
Coord A exon
chr15:4568992-4569375
Coord C2 exon
chr15:4562553-4562763
Length
384 bp
Sequences
Splice sites
3' ss Seq
TCTCCCATTATTGTTTGCAGCAC
3' ss Score
6.84
5' ss Seq
CAGGTAAAC
5' ss Score
7.82
Exon sequences
Seq C1 exon
TAGGTGTGGAGCATGTGGGCCAGCTGCTGCGGCTGGCTATGTCTGGATGATTCCAGTATGGAAGACACCAGAGGAAGCCAACAGCGCCAGGCCTTCACGAACTCAGGCTTCAGCAGTTACCCGTCTCCCACTGCACCAGAACACACATGCAAGTCCTGTGGAGGTCGCTTCGACAGTTTAACCAGGAAG
Seq A exon
CACGTGTGCATGGACTGCAAGAAGAGCTACTGCAGCCAGTGCTCCACTCAGCAGGAGCTCCAGCCGTGGCTGTGCCGCACCTGCCAGCGTTTCCGCGGCATCTTGTTGGAGCGAGCAGAACTCATGAAGCTCAAGGTGAAGGATCTCAGGGACTACCTTCACCTGCACGGCGTCCCGACGCAGATGTGCCGTGAGAAGGAGGAGCTGGTCGAGCTGGTTCTCGGCCAGCAGACGCCCACGTCTGACACGCACATTCCAGCCCCAGAAACCACACGCTTAGACCAGCAGGAGACCCTGGACACTCCCGTCATTACAGTGAGCCCGTCAGGGAACAACAACACAACAGAACTGGGACCACAAACACAAGCCATGGACAATGGACAG
Seq C2 exon
TTTTCAGACTCAGAGGAAGTTTTGGCTCCTGGCCGACGGGCGTCTCTCTCAGACCTAGGATCAGTGGAGGATATTGAGGATTTAAGTGTCCGGCAGTTGAAGGAGATTCTAGCCCGAAACTTTGTCGACTACAAGGGCTGCTGTGAGAAATGGGAGTTGATGGAGAGGGTCACCCGCCTGTACAACGACCAGAAGGACCTGCAAAACATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000042833_MULTIEX1-3/4=2-C2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.034 A=0.449 C2=0.303
Domain overlap (PFAM):
C1:
PF0231811=FYVE_2=PU(37.1=44.1)
A:
PF0231811=FYVE_2=PD(60.0=32.8),PF102084=Armet=WD(100=57.0),PF0203722=SAP=WD(100=16.4)
C2:
PF102084=Armet=PU(88.1=83.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGCTGGCTATGTCTGGATGA
R:
CCTTCTGGTCGTTGTACAGGC
Band lengths:
356-740
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]