GgaEX1049010 @ galGal4
Exon Skipping
Gene
ENSGALG00000002225 | RFFL
Description
E3 ubiquitin-protein ligase rififylin [Source:RefSeq peptide;Acc:NP_001025882]
Coordinates
chr19:4492344-4498247:+
Coord C1 exon
chr19:4492344-4492528
Coord A exon
chr19:4496470-4496874
Coord C2 exon
chr19:4498164-4498247
Length
405 bp
Sequences
Splice sites
3' ss Seq
TGTTCCCTTCTCTTTGCCAGCAT
3' ss Score
6.62
5' ss Seq
GAGGTACAG
5' ss Score
6.62
Exon sequences
Seq C1 exon
TTACTATGTGGGCAAGCTGCTGTAACTGGTTCTGCCTGGATGGCTCACCCGAGGAGATGCAGGCACCGCAGGGAGCCCGTGCCCAAGCCTACTCCAACCCCGGGTACAGCTCCTTCCCATCACCCACAGCTTCGGAGCAGAGCTGCAAAGCGTGTGGGCTGCACTTCGACAGCTCCTCGAGGAAG
Seq A exon
CATATCTGCTTGGACTGTAAGAAGAACTTCTGCACGTCCTGTTCAAGCCAGCCCGAAGGTGGTCCCCTGCTCTGCCACCTCTGTCAGCGTGTCCGAGCCACAGCTTTTCAGCGGGAAGAGCTGATCAAGATGAAGGTGAAGGATCTGCGAGACTACTTGGCGCTCCGAGAGATCTCCACCGAGCTGTGCCGTGAGAAGGAGGACCTGGTGTTCCTGGTTCTTGGCCACCAACCACCGCTTAGCCAGGAGGAACAGATGAGAACAAACCCATTTAATACTAGTGCCTCTGGACAGCAAGACTTTGTGATTCTCCCACCACCCAGCACAGCCTCTCCTACCTCACACGACGCATCCCCGGTGTCTGCAGATCCCACCTCAAGCTCACTAGCTCAGGAACACCGAGAG
Seq C2 exon
GGAATTGGGTATGTGCCTCCAAGCCAAGTTGGTATGACAGGAGTTGAGAATGCAGCAGAAGCACCAACAGAGGAGGAGACACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002225-'14-2,'14-1,16-2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.083 A=0.444 C2=1.000
Domain overlap (PFAM):
C1:
PF054587=Siva=PU(52.1=81.7),PF0231811=FYVE_2=PU(32.8=36.7)
A:
PF054587=Siva=PD(45.7=31.9),PF0231811=FYVE_2=PD(64.2=31.9)
C2:
PF102084=Armet=PU(1.3=3.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACTATGTGGGCAAGCTGCTG
R:
TCTCCTCCTCTGTTGGTGCTT
Band lengths:
263-668
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]