MmuEX6088217 @ mm9
Exon Skipping
Gene
ENSMUSG00000020696 | Rffl
Description
ring finger and FYVE like domain containing protein [Source:MGI Symbol;Acc:MGI:1914588]
Coordinates
chr11:82624530-82632105:-
Coord C1 exon
chr11:82631918-82632105
Coord A exon
chr11:82625902-82626312
Coord C2 exon
chr11:82624530-82624613
Length
411 bp
Sequences
Splice sites
3' ss Seq
CTGTCTCTTGCTCTAAGCAGCAG
3' ss Score
5.5
5' ss Seq
CAGGTAGGA
5' ss Score
9.79
Exon sequences
Seq C1 exon
ATTTTATCATGTGGGCATCCTGCTGCAACTGGTTCTGCTTGGATGGACAGCCTGAGGAGGCACCACCACCACAGGGAGCCAGGACACAAGCCTATTCCAACCCTGGGTACAGCTCCTTCCCTTCCCCCACAGGCTCGGAACCTAGCTGCAAGGCCTGCGGGGTCCATTTCGCAAGCACAACCCGGAAG
Seq A exon
CAGACCTGCTTGGACTGTAAGAAAAACTTCTGCATGACTTGTTCGAGCCAAGAGGGGAATGGGCCACGCCTCTGCCTTCTCTGCCTACGGTTCCGAGCCACGGCCTTCCAGCGGGAGGAGCTCATGAAGATGAAGGTGAAGGACCTGAGGGACTATCTCAGCCTCCACGACATCTCTACGGAAATGTGCCGGGAGAAAGAGGAGCTGGTGTTCCTGGTGCTTGGCCAGCAGCCTGTAATTTCTGAGGCGGACAGGACTCGTGTTCCCCACTTGCCCCAGGCCTTCCCTGAGCAGCAGGCCTTCCTGACCCAGCCTCAAACCAGCACAGTGCCTCCTACCTCACCTGGCCTCCCTTCTTCACCTGCACAAGTCACCTCTGTCCCCTTAGCCCAGGATCAGGAAACTCAGCAG
Seq C2 exon
GCCGTTGGCCATGTGTCTCAGGACCACGAGGAGCCCATCTTCCCGGAGAGCACAGCCAGAGTACCTACTGAGGATGAGACCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000020696-'9-11,'9-10,11-11=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.153 A=0.372 C2=1.000
Domain overlap (PFAM):
C1:
PF0231811=FYVE_2=PU(31.8=33.3)
A:
PF0136316=FYVE=PD(73.3=46.0),PF102084=Armet=WD(100=55.5),PF0203722=SAP=WD(100=15.3)
C2:
PF102084=Armet=PU(26.5=96.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTATCATGTGGGCATCCTGCT
R:
CTGGGTCTCATCCTCAGTAGGT
Band lengths:
270-681
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: