DreEX0061878 @ danRer10
Exon Skipping
Gene
ENSDARG00000007727 | rgl2
Description
ral guanine nucleotide dissociation stimulator-like 2 [Source:ZFIN;Acc:ZDB-GENE-010131-1]
Coordinates
chr16:45410421-45413216:-
Coord C1 exon
chr16:45413157-45413216
Coord A exon
chr16:45410672-45410758
Coord C2 exon
chr16:45410421-45410453
Length
87 bp
Sequences
Splice sites
3' ss Seq
ATAGTGTATTTCTTTTGCAGTCG
3' ss Score
7.34
5' ss Seq
GAGGTGAGG
5' ss Score
8.41
Exon sequences
Seq C1 exon
GAGGGGACTTCCAAATTTGCAAACCATGACACTAAAATCAACAACAGGAGATTTACTGGG
Seq A exon
TCGTGCGCTCAAGGCACTGTACCATACCTGGGCATATTCCTCAGAGATCTCACCATGCTGGACACTGCAGTCAAAGACAGACTAGAG
Seq C2 exon
AATGGCTTCATCAACTTCGATAAACGACGACGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000007727-'15-15,'15-14,16-15
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.050 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0061714=RasGEF=FE(9.0=100),PF094555=Cas_DxTHG=FE(10.2=100)
A:
PF0061714=RasGEF=FE(13.2=100),PF094555=Cas_DxTHG=FE(15.0=100)
C2:
PF0061714=RasGEF=FE(4.7=100),PF094555=Cas_DxTHG=PD(0.1=0.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGGGACTTCCAAATTTGCA
R:
TCGTTTATCGAAGTTGATGAAGCCA
Band lengths:
87-174
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]