DreEX0064459 @ danRer10
Exon Skipping
Gene
ENSDARG00000010728 | scin
Description
scinderin [Source:ZFIN;Acc:ZDB-GENE-060503-6]
Coordinates
chr19:31765682-31777980:-
Coord C1 exon
chr19:31777826-31777980
Coord A exon
chr19:31773916-31774077
Coord C2 exon
chr19:31765682-31765831
Length
162 bp
Sequences
Splice sites
3' ss Seq
ATATTTTCTTACCTTCTCAGAGT
3' ss Score
9.46
5' ss Seq
CCGGTAAGA
5' ss Score
10.1
Exon sequences
Seq C1 exon
GTAAGGAATGTTCTCAAGATGAAAGTACAGCAGCAGCCATCTTTTCAACTCAAATGGATGACTACCTGGGAGGTAAACCAGTTCAGTATCGTGAAATCCAGGGTTTTGAGTCCACCGTCTTCACCAGCTACTTCAAAGGCGGGATAAAGTATAAG
Seq A exon
AGTGGTGGAGTGGCATCAGGATTTCAACATGTGATCACCAATGATCTTACAGCCCGGAGACTCTTCCATATTAAGGGCAGGCGAACTGTCCGGGCCACAGAAGTTCCTCTCAGCTGGGCCAGTTTCAACAACGGTGACTGTTTCATTGTTGATCTGGGACCG
Seq C2 exon
GTAATCTACCAATGGTGTGGGTCTAAATGCAACAAGTTTGAGCGCATCAAAGCAGCCCAAGTAGGTACAGGCATTCGAGACAATGAGAGGAGCGGACGAGCTAAACTGGTGGTTATAGAAGAAGGACAAGAGCCCGCAGAGATGACAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000010728_CASSETTE3
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.160
Domain overlap (PFAM):
C1:
PF0062617=Gelsolin=PD(49.4=78.8)
A:
PF0062617=Gelsolin=PU(34.2=48.1)
C2:
PF0062617=Gelsolin=PD(63.2=96.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGCAGCAGCCATCTTTTCA
R:
AACCACCAGTTTAGCTCGTCC
Band lengths:
243-405
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]