GgaEX1051129 @ galGal3
Exon Skipping
Gene
ENSGALG00000010770 | ADSV_CHICK
Description
NA
Coordinates
chr2:26733756-26748333:+
Coord C1 exon
chr2:26733756-26733910
Coord A exon
chr2:26735402-26735563
Coord C2 exon
chr2:26748184-26748333
Length
162 bp
Sequences
Splice sites
3' ss Seq
TGCTTTGTGTTTTTATTCAGGCA
3' ss Score
9.39
5' ss Seq
AATGTAAGT
5' ss Score
8.62
Exon sequences
Seq C1 exon
GGAAAGAATGTACCCAGGATGAGAGTACAGCTGCAGCTATCTTCACTGTTCAACTGGATGACTACTTAGGAGGAAAGCCTGTACAGAGCAGAGAAATTCAAGGATATGAATCTAATGAGTTTGTGAGCTATTTCAAAGGAGGAATTAAATACAAG
Seq A exon
GCAGGTGGTGTTGCCTCTGGATTTAATCACGTTGTTACTAATGATCTGAGTGCCCAGAGGCTTCTCCATATCAAGGGCCGGAGAGTTGTGAGAGCCACAGAAGTCCCCTTGACTTGGGCCAGCTTCAACAAAGGAGATTGTTTCATTATTGACCTTGGAAAT
Seq C2 exon
GAGATCTATCAATGGTGTGGCTCTTCATGCAACAAATACGAACGCCTGAAGGCCACTCAAGTTGCTGTTGGCATTCGGGACAATGAACGAAACGGGAGGTCCAGATTAATTACAGTTGAAGAAGGCAGCGAACCGGACGAGCTTATAACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010770-'1-3,'1-2,2-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.119
Domain overlap (PFAM):
C1:
PF0062617=Gelsolin=PD(49.4=78.8)
A:
PF0062617=Gelsolin=PU(51.0=48.1)
C2:
PF0062617=Gelsolin=PD(63.2=96.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGATGAGAGTACAGCTGCAGC
R:
ATCTGGACCTCCCGTTTCGTT
Band lengths:
245-407
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]