GgaEX1051129 @ galGal4
Exon Skipping
Gene
ENSGALG00000010770 | SCIN
Description
Adseverin [Source:UniProtKB/Swiss-Prot;Acc:Q5ZIV9]
Coordinates
chr2:26876195-26890772:+
Coord C1 exon
chr2:26876195-26876349
Coord A exon
chr2:26877841-26878002
Coord C2 exon
chr2:26890623-26890772
Length
162 bp
Sequences
Splice sites
3' ss Seq
TGCTTTGTGTTTTTATTCAGGCA
3' ss Score
9.39
5' ss Seq
AATGTAAGT
5' ss Score
8.62
Exon sequences
Seq C1 exon
GGAAAGAATGTACCCAGGATGAGAGTACAGCTGCAGCTATCTTCACTGTTCAACTGGATGACTACTTAGGAGGAAAGCCTGTACAGAGCAGAGAAATTCAAGGATATGAATCTAATGAGTTTGTGAGCTATTTCAAAGGAGGAATTAAATACAAG
Seq A exon
GCAGGTGGTGTTGCCTCTGGATTTAATCACGTTGTTACTAATGATCTGAGTGCCCAGAGGCTTCTCCATATCAAGGGCCGGAGAGTTGTGAGAGCCACAGAAGTCCCCTTGACTTGGGCCAGCTTCAACAAAGGAGATTGTTTCATTATTGACCTTGGAAAT
Seq C2 exon
GAGATCTATCAATGGTGTGGCTCTTCATGCAACAAATACGAACGCCTGAAGGCCACTCAAGTTGCTGTTGGCATTCGGGACAATGAACGAAACGGGAGGTCCAGATTAATTACAGTTGAAGAAGGCAGCGAACCGGACGAGCTTATAACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010770_CASSETTE1
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.140
Domain overlap (PFAM):
C1:
PF0062617=Gelsolin=PD(49.4=78.8)
A:
PF0062617=Gelsolin=PU(34.2=48.1)
C2:
PF0062617=Gelsolin=PD(63.2=96.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGATGAGAGTACAGCTGCAGC
R:
ATCTGGACCTCCCGTTTCGTT
Band lengths:
245-407
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]