MmuEX6080796 @ mm10
Exon Skipping
Gene
ENSMUSG00000002565 | Scin
Description
scinderin [Source:MGI Symbol;Acc:MGI:1306794]
Coordinates
chr12:40104927-40128035:-
Coord C1 exon
chr12:40127881-40128035
Coord A exon
chr12:40124567-40124728
Coord C2 exon
chr12:40104927-40105076
Length
162 bp
Sequences
Splice sites
3' ss Seq
GTTTTGCTCCCCCTGGCCAGGCT
3' ss Score
6.23
5' ss Seq
ACCGTAAGT
5' ss Score
10.43
Exon sequences
Seq C1 exon
GAAAGGAGTGTTCCCAGGATGAGAGCACAGCGGCTGCCATCTTTACGGTCCAGATGGACGACTATTTGGGTGGCAAGCCAGTCCAGAGCAGAGAGCTTCAAGGCTATGAGTCGACTGATTTTGTGGGCTATTTCAAAGGCGGTCTGAAGTACAAG
Seq A exon
GCTGGAGGTGTGGCTTCTGGACTAAACCATGTCCTCACCAATGATCTGACTGCGAAAAGACTTCTGCACGTGAAGGGTCGGAGAGTGGTCAGAGCCACTGAAGTTCCCCTCAGCTGGGAGAGCTTCAACAAGGGCGACTGCTTCATCATTGACCTTGGCACC
Seq C2 exon
GAAATTTACCAGTGGTGTGGTTCCTCCTGCAACAAATATGAGCGTCTGAAAGCAAGCCAGGTGGCCATTGGCATCCGGGACAATGAGAGGAAAGGAAGATCTCAACTCATTGTGGTGGAAGAAGGAAGTGAACCATCAGAGCTCATGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000002565-'2-3,'2-2,4-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.100
Domain overlap (PFAM):
C1:
PF0062617=Gelsolin=PD(49.4=78.8)
A:
PF0062617=Gelsolin=PU(34.2=48.1)
C2:
PF0062617=Gelsolin=PD(63.2=96.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTTCCCAGGATGAGAGCACA
R:
CCTTTCCTCTCATTGTCCCGG
Band lengths:
242-404
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types