DreEX0064677 @ danRer10
Exon Skipping
Gene
ENSDARG00000095515 | sdccag3
Description
serologically defined colon cancer antigen 3 [Source:ZFIN;Acc:ZDB-GENE-060526-242]
Coordinates
chr5:50555774-50559023:-
Coord C1 exon
chr5:50558619-50559023
Coord A exon
chr5:50556261-50556372
Coord C2 exon
chr5:50555774-50555836
Length
112 bp
Sequences
Splice sites
3' ss Seq
GCACAATCCAATTTGAATAGGAT
3' ss Score
3.29
5' ss Seq
ACGGTATTG
5' ss Score
4.64
Exon sequences
Seq C1 exon
GTGTACAATGGTGCATGCCTAGTCGAGCAGGACTATAACACCTCTATAGACTTTGCTACCAAGGGTCCTTTTTTCACTGATCCCTCTGCACTCTGTCAGCCTCCTGAAAGTGAACCCGACGAGACATGGATTGAAAGCCACCAACGGTCAGCCATTGAAGGTTCTCCTGACTTTGAACTATGTGGGGCATCAGACATCAGTGCTTACTCTGAGCAGTCATCTCTGTGCAGTGATGAGAGAGAAGCGGCTGAATGGGAACTGGGTCAGTCTGACTTCCTGCCAAAAAAGCACTTATCCAGAATCAGCACTGGAAGCTATGAGGGGGATGAAGAGACTTCAGTGATTGATATTTCCTTCCATCATAAGAGAGGCAATGCTGAAAATGGCACAAAGAATCTCCAGCAG
Seq A exon
GATTAAACAACTCACAGATGAGATGCACAATAAGAAGTTACAGGAAGAGAAAGAGGCAAATGATTTGGAAGCAATGGTGCAGTCGGTAGAACAAAATCTTCAGCTAATGACG
Seq C2 exon
AAGCGGGCAGTAAAGGCTGAAAATAATATTTCAAAATTGAAACAAGAGATGCTAAAACTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000095515_MULTIEX1-2/3=C1-3
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.459 A=0.803 C2=0.190
Domain overlap (PFAM):
C1:
PF154191=LNP1=PU(19.9=20.7),PF149921=TMCO5=PU(16.3=17.8),PF087025=Fib_alpha=PU(16.8=16.3),PF057016=WEMBL=PU(12.3=13.3)
A:
PF154191=LNP1=FE(26.2=100),PF149921=TMCO5=FE(25.2=100),PF087025=Fib_alpha=FE(28.2=100),PF057016=WEMBL=FE(25.3=100)
C2:
PF154191=LNP1=FE(14.2=100),PF149921=TMCO5=FE(13.6=100),PF087025=Fib_alpha=FE(15.3=100),PF057016=WEMBL=FE(13.7=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGGGCATCAGACATCAGTG
R:
TTTTCAGCCTTTACTGCCCGC
Band lengths:
247-359
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]