GgaEX6015438 @ galGal3
Exon Skipping
Description
NA
Coordinates
chr17:8579361-8580349:+
Coord C1 exon
chr17:8579361-8579434
Coord A exon
chr17:8580050-8580161
Coord C2 exon
chr17:8580287-8580349
Length
112 bp
Sequences
Splice sites
3' ss Seq
TTTTTTTACCTTATTTTAAGGAT
3' ss Score
9.23
5' ss Seq
ACTGTAAGT
5' ss Score
8.59
Exon sequences
Seq C1 exon
CTGAAAGCAGAGAACGCCGCGTTGCGGAGGAGGATCCGCGAGCTGCAGGAGATCTCTGGGGCTCAAACAGACGT
Seq A exon
GATGAAAAAGCTCGAAAGAAAGCTCGAGGAAAACAAAATCAAAGAAGAGAAGGAAGCTCGGGACTTGGAAGCAATGGTGCAGCACGTGGAGCAGAATCTCCAGCTGATGACT
Seq C2 exon
AAACGGGCTGTTAAGGCAGAAAATAATGCTACGAAACTGAAACAGGAAAATGCATTACTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001921-'2-2,'2-1,3-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.160 A=0.658 C2=0.333
Domain overlap (PFAM):
C1:
PF0076914=ERM=FE(14.0=100),PF154191=LNP1=FE(17.0=100),PF0026115=Tropomyosin=FE(21.2=100)
A:
PF0076914=ERM=FE(21.5=100),PF154191=LNP1=FE(26.2=100),PF0026115=Tropomyosin=FE(32.7=100)
C2:
PF0076914=ERM=FE(11.6=100),PF154191=LNP1=FE(14.2=100),PF0026115=Tropomyosin=FE(17.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGAAAGCAGAGAACGCCGC
R:
AATGCATTTTCCTGTTTCAGTTTCGT
Band lengths:
130-242
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]