HsaEX0056719 @ hg19
Exon Skipping
Gene
ENSG00000165689 | SDCCAG3
Description
serologically defined colon cancer antigen 3 [Source:HGNC Symbol;Acc:10667]
Coordinates
chr9:139299083-139302013:-
Coord C1 exon
chr9:139301597-139302013
Coord A exon
chr9:139299570-139299654
Coord C2 exon
chr9:139299083-139299145
Length
85 bp
Sequences
Splice sites
3' ss Seq
TCGGGTTTTTCTTTAACAAGGGT
3' ss Score
3.9
5' ss Seq
CAGGTGGAG
5' ss Score
2.57
Exon sequences
Seq C1 exon
GAAGCCTCGAGGCATTCCCTGGGACTTGACCACAACTCCCCACCCTCCCAAACCGGCGGGTATGGCCTGGAGTATCAGCAGCCATTTTTCGAGGATCCGACAGGGGCTGGTGACCTCCTGGATGAGGAGGAGGATGAGGACACCGGATGGAGTGGGGCCTACCTGCCGTCCGCCATCGAGCAGACTCACCCCGAGAGGGTCCCTGCCGGCACGTCGCCCTGCAGCACATACCTTTCCTTTTTCTCCACCCCGTCGGAGCTGGCAGGGCCTGAGTCTCTGCCCTCGTGGGCGTTGAGTGACACTGATTCTCGCGTGTCTCCGGCCTCTCCGGCAGGGAGTCCTAGCGCAGACTTTGCGGTTCATGGAGAGTCTCTGGGAGACAGGCACCTGCGGACGCTGCAGATAAGTTACGACGCA
Seq A exon
GGTGAGGACGCTTGAGCGGAAGTTAGAAGCAAAAATGATCAAGGAGGAAAGCGACTACCACGACCTGGAGTCGGTGGTTCAGCAG
Seq C2 exon
AAACGGGCTGTAAAGGCAGAAAACCACGTCGTGAAACTAAAACAGGAAATCAGTTTGCTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000165689-'6-13,'6-11,10-13
Average complexity
C1
Mappability confidence:
100%=86=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.727 A=0.050 C2=0.000
Domain overlap (PFAM):
C1:
PF0076914=ERM=PU(8.9=11.5),PF131661=AAA_13=PU(8.9=10.8),PF0026115=Tropomyosin=PU(10.8=8.6),PF143571=DUF4404=PU(0.1=0.0)
A:
PF0218313=HALZ=PD(8.1=10.3),PF143571=DUF4404=FE(43.8=100)
C2:
PF0076914=ERM=FE(11.2=100),PF131661=AAA_13=FE(11.8=100),PF0026115=Tropomyosin=FE(18.0=100),PF143571=DUF4404=PD(3.0=9.5),PF052669=DUF724=FE(21.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGCGTTGAGTGACACTGATT
R:
TTTCACGACGTGGTTTTCTGC
Band lengths:
167-252
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)