GgaEX6015438 @ galGal4
Exon Skipping
Gene
ENSGALG00000001921 | SDCCAG3
Description
serologically defined colon cancer antigen 3 [Source:HGNC Symbol;Acc:HGNC:10667]
Coordinates
chr17:7890262-7891250:+
Coord C1 exon
chr17:7890262-7890335
Coord A exon
chr17:7890951-7891062
Coord C2 exon
chr17:7891188-7891250
Length
112 bp
Sequences
Splice sites
3' ss Seq
TTTTTTTACCTTATTTTAAGGAT
3' ss Score
9.23
5' ss Seq
ACTGTAAGT
5' ss Score
8.59
Exon sequences
Seq C1 exon
CTGAAAGCAGAGAACGCCGCGTTGCGGAGGAGGATCCGCGAGCTGCAGGAGATCTCTGGGGCTCAAACAGACGT
Seq A exon
GATGAAAAAGCTCGAAAGAAAGCTCGAGGAAAACAAAATCAAAGAAGAGAAGGAAGCTCGGGACTTGGAAGCAATGGTGCAGCACGTGGAGCAGAATCTCCAGCTGATGACT
Seq C2 exon
AAACGGGCTGTTAAGGCAGAAAATAATGCTACGAAACTGAAACAGGAAAATGCATTACTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001921-'3-2,'3-1,6-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.560 A=0.697 C2=0.262
Domain overlap (PFAM):
C1:
PF154191=LNP1=FE(15.1=100),PF0076914=ERM=FE(14.0=100)
A:
PF154191=LNP1=FE(23.3=100),PF0076914=ERM=FE(21.5=100)
C2:
PF154191=LNP1=FE(12.6=100),PF0076914=ERM=FE(11.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGAAAGCAGAGAACGCCGC
R:
AATGCATTTTCCTGTTTCAGTTTCGT
Band lengths:
130-242
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]