DreEX0064678 @ danRer10
Exon Skipping
Gene
ENSDARG00000095515 | sdccag3
Description
serologically defined colon cancer antigen 3 [Source:ZFIN;Acc:ZDB-GENE-060526-242]
Coordinates
chr5:50554017-50559023:-
Coord C1 exon
chr5:50558619-50559023
Coord A exon
chr5:50555774-50555836
Coord C2 exon
chr5:50554017-50554156
Length
63 bp
Sequences
Splice sites
3' ss Seq
TTGTGCTTTATTCAATACAGAAG
3' ss Score
5.52
5' ss Seq
CAGGTTTGT
5' ss Score
7.44
Exon sequences
Seq C1 exon
GTGTACAATGGTGCATGCCTAGTCGAGCAGGACTATAACACCTCTATAGACTTTGCTACCAAGGGTCCTTTTTTCACTGATCCCTCTGCACTCTGTCAGCCTCCTGAAAGTGAACCCGACGAGACATGGATTGAAAGCCACCAACGGTCAGCCATTGAAGGTTCTCCTGACTTTGAACTATGTGGGGCATCAGACATCAGTGCTTACTCTGAGCAGTCATCTCTGTGCAGTGATGAGAGAGAAGCGGCTGAATGGGAACTGGGTCAGTCTGACTTCCTGCCAAAAAAGCACTTATCCAGAATCAGCACTGGAAGCTATGAGGGGGATGAAGAGACTTCAGTGATTGATATTTCCTTCCATCATAAGAGAGGCAATGCTGAAAATGGCACAAAGAATCTCCAGCAG
Seq A exon
AAGCGGGCAGTAAAGGCTGAAAATAATATTTCAAAATTGAAACAAGAGATGCTAAAACTCCAG
Seq C2 exon
GGCCAGCTTGAAGACTATAAAAGTGAAAACGAAAGGCTGAGACTTGGAGAAACGGCAGCCTTAGCCACAATGAGACACAATGCGCAAGTGGCCTCTGAATACCTCAACAAAGCAGCTCAAGATGCAGAGATCTCCATCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000095515_MULTIEX1-3/3=C1-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.459 A=0.190 C2=0.319
Domain overlap (PFAM):
C1:
PF154191=LNP1=PU(19.9=20.7),PF149921=TMCO5=PU(16.3=17.8),PF087025=Fib_alpha=PU(16.8=16.3),PF057016=WEMBL=PU(12.3=13.3)
A:
PF154191=LNP1=FE(14.2=100),PF149921=TMCO5=FE(13.6=100),PF087025=Fib_alpha=FE(15.3=100),PF057016=WEMBL=FE(13.7=100)
C2:
PF154191=LNP1=PD(19.9=59.6),PF149921=TMCO5=PD(25.9=80.9),PF087025=Fib_alpha=PD(18.3=51.1),PF057016=WEMBL=PD(29.5=91.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGCAATGCTGAAAATGGCAC
R:
GGTATTCAGAGGCCACTTGCG
Band lengths:
140-203
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]