GgaEX6015437 @ galGal4
Exon Skipping
Gene
ENSGALG00000001921 | SDCCAG3
Description
serologically defined colon cancer antigen 3 [Source:HGNC Symbol;Acc:HGNC:10667]
Coordinates
chr17:7890951-7891499:+
Coord C1 exon
chr17:7890951-7891062
Coord A exon
chr17:7891188-7891250
Coord C2 exon
chr17:7891360-7891499
Length
63 bp
Sequences
Splice sites
3' ss Seq
CATCCTTTGTTCTCTTTCAGAAA
3' ss Score
12.24
5' ss Seq
CAGGTACAA
5' ss Score
7.09
Exon sequences
Seq C1 exon
GATGAAAAAGCTCGAAAGAAAGCTCGAGGAAAACAAAATCAAAGAAGAGAAGGAAGCTCGGGACTTGGAAGCAATGGTGCAGCACGTGGAGCAGAATCTCCAGCTGATGACT
Seq A exon
AAACGGGCTGTTAAGGCAGAAAATAATGCTACGAAACTGAAACAGGAAAATGCATTACTTCAG
Seq C2 exon
GTTCAGCTGAAGAATTACAAGATGGAGAACGAAGCTCTGAGGTCGGGGCAGTCAGCAAGCCTGGCTGCGGTGAAACAGAACGCAGACACGGCCCTACAGAACCTCCTGACTGTTATCACAAACTCTCAGTCTTCGATAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001921-'6-3,'6-2,7-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.697 A=0.262 C2=0.064
Domain overlap (PFAM):
C1:
PF154191=LNP1=FE(23.3=100),PF0076914=ERM=FE(21.5=100)
A:
PF154191=LNP1=FE(12.6=100),PF0076914=ERM=FE(11.6=100)
C2:
PF154191=LNP1=PD(17.6=59.6),PF0076914=ERM=FE(26.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCACGTGGAGCAGAATCTC
R:
AGTCAGGAGGTTCTGTAGGGC
Band lengths:
144-207
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]