GgaEX6015437 @ galGal3
Exon Skipping
Description
NA
Coordinates
chr17:8580050-8580598:+
Coord C1 exon
chr17:8580050-8580161
Coord A exon
chr17:8580287-8580349
Coord C2 exon
chr17:8580459-8580598
Length
63 bp
Sequences
Splice sites
3' ss Seq
CATCCTTTGTTCTCTTTCAGAAA
3' ss Score
12.24
5' ss Seq
CAGGTACAA
5' ss Score
7.09
Exon sequences
Seq C1 exon
GATGAAAAAGCTCGAAAGAAAGCTCGAGGAAAACAAAATCAAAGAAGAGAAGGAAGCTCGGGACTTGGAAGCAATGGTGCAGCACGTGGAGCAGAATCTCCAGCTGATGACT
Seq A exon
AAACGGGCTGTTAAGGCAGAAAATAATGCTACGAAACTGAAACAGGAAAATGCATTACTTCAG
Seq C2 exon
GTTCAGCTGAAGAATTACAAGATGGAGAACGAAGCTCTGAGGTCGGGGCAGTCAGCAAGCCTGGCTGCGGTGAAACAGAACGCAGACACGGCCCTACAGAACCTCCTGACTGTTATCACAAACTCTCAGTCTTCGATAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001921-'3-3,'3-2,4-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.658 A=0.333 C2=0.128
Domain overlap (PFAM):
C1:
PF0076914=ERM=FE(21.5=100),PF154191=LNP1=FE(26.2=100),PF0026115=Tropomyosin=FE(32.7=100)
A:
PF0076914=ERM=FE(11.6=100),PF154191=LNP1=FE(14.2=100),PF0026115=Tropomyosin=FE(17.7=100)
C2:
PF0076914=ERM=FE(26.7=100),PF154191=LNP1=PD(19.9=59.6),PF0026115=Tropomyosin=PD(23.0=55.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCACGTGGAGCAGAATCTC
R:
AGTCAGGAGGTTCTGTAGGGC
Band lengths:
144-207
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]