MmuEX0041372 @ mm10
Exon Skipping
Gene
ENSMUSG00000026927 | Sdccag3
Description
serologically defined colon cancer antigen 3 [Source:MGI Symbol;Acc:MGI:1915362]
Coordinates
chr2:26384682-26385609:-
Coord C1 exon
chr2:26385498-26385609
Coord A exon
chr2:26385083-26385145
Coord C2 exon
chr2:26384682-26384821
Length
63 bp
Sequences
Splice sites
3' ss Seq
TATTTTTTTGGGGGCCACAGAAA
3' ss Score
3.89
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
Exon sequences
Seq C1 exon
GGTGAGGACACTCGAACGGAAGTTGGAGGCGAAGATGATCAAGGAGGAGAGTGACTTCCATGACCTCGAGTCAGTAGTCCAGCAAGTCGAACAGAACCTTGAACTGATGACC
Seq A exon
AAACGGGCTGTAAAAGCAGAAAATCATGTCTTGAAGCTGAAACAGGAAATAAATTTGCTTCAG
Seq C2 exon
GCCCAGCTCTCAAACTTGAGGCGAGAAAATGAAGCCCTGCGGTCAGGCCAGGGTGCCAGCCTTTCTGTAGTGAAGCAGAACACCGACGTGGCCTTGCAGAACCTCCACCTTGTCATGAACAGTGCACACGCATCCATAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026927-'15-14,'15-13,18-14
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
Show structural model
Features
Disorder rate (Iupred):
C1=0.263 A=0.000 C2=0.085
Domain overlap (PFAM):
C1:
PF0026115=Tropomyosin=FE(19.9=100),PF131661=AAA_13=FE(30.8=100),PF0076914=ERM=FE(20.6=100)
A:
PF0026115=Tropomyosin=FE(10.8=100),PF131661=AAA_13=FE(16.7=100),PF0076914=ERM=FE(11.1=100)
C2:
PF0026115=Tropomyosin=FE(24.7=100),PF131661=AAA_13=PD(12.5=31.9),PF0076914=ERM=FE(25.6=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGAAGTTGGAGGCGAAGATG
R:
CAGGGCTTCATTTTCTCGCCT
Band lengths:
135-198
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types