DreEX0065141 @ danRer10
Exon Skipping
Gene
ENSDARG00000061976 | sema6bb
Description
sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6Bb [Source:ZFIN;Acc:ZDB-GENE-081105-129]
Coordinates
chr8:18940987-18952080:-
Coord C1 exon
chr8:18951931-18952080
Coord A exon
chr8:18947189-18947368
Coord C2 exon
chr8:18940987-18941127
Length
180 bp
Sequences
Splice sites
3' ss Seq
TTGTGTGCTGTCTCTTTCAGATA
3' ss Score
13.24
5' ss Seq
CAGGTAAAG
5' ss Score
9.65
Exon sequences
Seq C1 exon
GCCGGGTGGTTGTGCCGTACAAGGCTCCAAATTCAACTCCTCCAACTCTTTCCCTGATGACATGCTAACGTTTGTCAAAACTCATCCACTGATGGATGAAGCCGTCCCATCTCTTGGCCAGAGACCATGGATTGTTAGGACCATGGTCAG
Seq A exon
ATACCAGCTCAACAAGATGGTGGTGGACACAAACGCCGGGCCTTATGGGAACCAGACAGTGCTTTTCCTGGGATCAAGCCGAGGAACCATCCTCAAATTTCTGGTCACCCCTAACAGGGATAACACCGTGACCAACAACAACGTGTTCCTTGAGGAATTTGAAGGCTACAACCCTGACAG
Seq C2 exon
GTGTGGGACGGATTCTCCTCAGGCCAGGCAGCTGCTCTCTCTCACGCTGGACCGCATCAGTCACAGCCTCCTACTGACTTTCCCATCGTGCGTGATCAAAGTGCCTGTAGCTCGATGCCAACTCTATTCCGCCTGCATGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000061976-'13-21,'13-20,14-21
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.196 A=0.012 C2=0.031
Domain overlap (PFAM):
C1:
PF0140314=Sema=FE(11.9=100)
A:
PF0140314=Sema=FE(14.3=100)
C2:
PF0140314=Sema=PD(0.7=6.2),PF0143720=PSI=PU(13.8=18.8)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCTCCAAATTCAACTCCTCCA
R:
GCATCGAGCTACAGGCACTTT
Band lengths:
246-426
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]