DreEX0065742 @ danRer10
Exon Skipping
Gene
ENSDARG00000026137 | sfxn5b
Description
sideroflexin 5b [Source:ZFIN;Acc:ZDB-GENE-050706-107]
Coordinates
chr14:46327663-46332088:+
Coord C1 exon
chr14:46327663-46327717
Coord A exon
chr14:46331733-46331758
Coord C2 exon
chr14:46332035-46332088
Length
26 bp
Sequences
Splice sites
3' ss Seq
TATCTGTGTCCGTTTCACAGGCT
3' ss Score
9.71
5' ss Seq
ATCGTAAGT
5' ss Score
10.44
Exon sequences
Seq C1 exon
GCCATCATTCACCCCGACACCGGGGAAAAAATATTCATGCCTTTTCGCATGTCAG
Seq A exon
GCTATGTGCCATTCGGGACGCCAATC
Seq C2 exon
GTTGTTGGTCTTCTCCTTCCTAACCAGACTTTGGCCTCCACTGTTTTCTGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000026137_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0382012=Mtc=FE(5.8=100)
A:
PF0382012=Mtc=FE(2.6=100)
C2:
PF0382012=Mtc=FE(5.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATCATTCACCCCGACACCG
R:
CCAGAAAACAGTGGAGGCCAA
Band lengths:
104-130
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]