GgaEX1052176 @ galGal4
Exon Skipping
Gene
ENSGALG00000016094 | SFXN5
Description
sideroflexin 5 [Source:HGNC Symbol;Acc:HGNC:16073]
Coordinates
chr4:89318983-89325256:+
Coord C1 exon
chr4:89318983-89319037
Coord A exon
chr4:89320214-89320239
Coord C2 exon
chr4:89325203-89325256
Length
26 bp
Sequences
Splice sites
3' ss Seq
TTCCTTTATTTTCCTAATAGGTT
3' ss Score
9.94
5' ss Seq
ATCGTAAGT
5' ss Score
10.44
Exon sequences
Seq C1 exon
GCCATCATCCACCCCGACACAAACGAGACCATCTTCATGCCTTTCAGAATGTCAG
Seq A exon
GTTACATTCCCTTTGGAACACCCATC
Seq C2 exon
GTTGTTGGTCTTCTTCTGCCCAACCAGACGATAGCATCCACTGTGTTTTGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000016094_MULTIEX1-5/9=4-6
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0382012=Mtc=FE(5.8=100)
A:
PF0382012=Mtc=FE(2.6=100)
C2:
PF0382012=Mtc=FE(5.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCATCCACCCCGACACAAAC
R:
TGCCAAAACACAGTGGATGCT
Band lengths:
105-131
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]