GgaEX1052176 @ galGal3
Exon Skipping
Gene
ENSGALG00000016094 | SFXN5
Description
NA
Coordinates
chr4:93354121-93360394:+
Coord C1 exon
chr4:93354121-93354175
Coord A exon
chr4:93355352-93355377
Coord C2 exon
chr4:93360341-93360394
Length
26 bp
Sequences
Splice sites
3' ss Seq
TTCCTTTATTTTCCTAATAGGTT
3' ss Score
9.94
5' ss Seq
ATCGTAAGT
5' ss Score
10.44
Exon sequences
Seq C1 exon
GCCATCATCCACCCCGACACAAACGAGACCATCTTCATGCCTTTCAGAATGTCAG
Seq A exon
GTTACATTCCCTTTGGAACACCCATC
Seq C2 exon
GTTGTTGGTCTTCTTCTGCCCAACCAGACGATAGCATCCACTGTGTTTTGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000016094-'7-18,'7-10,8-18=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0382012=Mtc=FE(11.7=100)
A:
PF0382012=Mtc=FE(2.6=100)
C2:
PF0382012=Mtc=FE(11.0=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCATCCACCCCGACACAAAC
R:
TGCCAAAACACAGTGGATGCT
Band lengths:
105-131
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]