DreEX6060735 @ danRer10
Exon Skipping
Gene
ENSDARG00000103595 | sfxn5a
Description
sideroflexin 5a [Source:ZFIN;Acc:ZDB-GENE-090312-174]
Coordinates
chr13:14939773-14940593:-
Coord C1 exon
chr13:14940539-14940593
Coord A exon
chr13:14939923-14939948
Coord C2 exon
chr13:14939773-14939826
Length
26 bp
Sequences
Splice sites
3' ss Seq
GTTTTTCTTTTTTATTTCAGGTT
3' ss Score
11.45
5' ss Seq
GTGGTAGGT
5' ss Score
7.23
Exon sequences
Seq C1 exon
GCCATCATCCATCCAGACACAGGAGAGAAGATCCCCATGCCCTTTCGCATGTCAG
Seq A exon
GTTTTGTGCCCTTTGGTACTCCAGTG
Seq C2 exon
GTCGTAGGCCTATTGTTACCCAATCAGACATTTTCTTCTACCATCTTTTGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000103595-'5-5,'5-4,6-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0382012=Mtc=FE(5.8=100)
A:
PF0382012=Mtc=FE(2.6=100)
C2:
PF0382012=Mtc=FE(5.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCATCATCCATCCAGACACA
R:
CCAAAAGATGGTAGAAGAAAATGTCT
Band lengths:
106-132
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]