RnoEX0080180 @ rn6
Exon Skipping
Gene
ENSRNOG00000037871 | Sfxn5
Description
sideroflexin 5 [Source:RGD Symbol;Acc:628706]
Coordinates
chr4:117049511-117068103:-
Coord C1 exon
chr4:117068049-117068103
Coord A exon
chr4:117065871-117065896
Coord C2 exon
chr4:117049511-117049564
Length
26 bp
Sequences
Splice sites
3' ss Seq
TTTTCTCTCCCCACCCACAGGTT
3' ss Score
12.7
5' ss Seq
ATTGTAAGT
5' ss Score
8.54
Exon sequences
Seq C1 exon
GCTATCCTACACCCGGACACCAACGAGAAGATCTTCATGCCTTTCAGAATGTCAG
Seq A exon
GTTACATTCCTTTCGGGACGCCAATT
Seq C2 exon
GTCGTGGGACTTCTCTTGCCTAACCAGACCCTGGCATCCACTGTCTTCTGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000037871-'15-13,'15-12,17-13
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0382012=Mtc=FE(12.0=100)
A:
PF0382012=Mtc=FE(2.6=100)
C2:
PF0382012=Mtc=FE(11.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTATCCTACACCCGGACACCA
R:
CTGCCAGAAGACAGTGGATGC
Band lengths:
108-134
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]