DreEX0068160 @ danRer10
Exon Skipping
Gene
ENSDARG00000075487 | si:ch211-267e7.3
Description
si:ch211-267e7.3 [Source:ZFIN;Acc:ZDB-GENE-070912-265]
Coordinates
chr2:20923734-20926531:-
Coord C1 exon
chr2:20926408-20926531
Coord A exon
chr2:20923992-20924072
Coord C2 exon
chr2:20923734-20923909
Length
81 bp
Sequences
Splice sites
3' ss Seq
ACAAATATCTTTGTCTTTAGGTT
3' ss Score
9.66
5' ss Seq
TGGGTAAGA
5' ss Score
8.91
Exon sequences
Seq C1 exon
GTAGTCGGGTGTGATGGGAAACTGTATTCCAGTAAAACCATAGACAAATGTGGAGTCTGTGGTGGAAACGGCGCTTCATGTTATCGTGTCTCAGGAACTTACCGGAAGGGGATCACACAGTTAG
Seq A exon
GTTATGTGTTTATAACCAATATACCAGTTGGTGCTACTGACATCCAAATCATAGAGAGGCGTAAAACTGAAAATATCTTGG
Seq C2 exon
CTCTTTCTGATGAAGCTGGCCACTTCTTCTTCAATGGCAACAGTGTGATTGACAATCCACAAAACTTTCATGTTGCCGGGACGGTCTTTAAATACAGGAGGCCTGCAAACCTCTTCTCTGATGGCTTTGAGTACATCATGGCTCAGGGTCCCACCCAGCAGGCCCTGAATGTCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000075487_MULTIEX1-6/9=5-7
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF059869=ADAM_spacer1=PU(11.9=33.3)
A:
PF059869=ADAM_spacer1=FE(22.9=100)
C2:
PF059869=ADAM_spacer1=FE(49.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACGGCGCTTCATGTTATCGT
R:
CAGAGAAGAGGTTTGCAGGCC
Band lengths:
178-259
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]