DreEX0071286 @ danRer10
Exon Skipping
Gene
ENSDARG00000095339 | si:dkeyp-44a8.4
Description
si:dkeyp-44a8.4 [Source:ZFIN;Acc:ZDB-GENE-070705-543]
Coordinates
chr14:6372942-6383607:-
Coord C1 exon
chr14:6383581-6383607
Coord A exon
chr14:6376993-6377064
Coord C2 exon
chr14:6372942-6373058
Length
72 bp
Sequences
Splice sites
3' ss Seq
CTGGGTCTTTTTCTGCACAGATG
3' ss Score
8.75
5' ss Seq
AAGGTAGCA
5' ss Score
6.28
Exon sequences
Seq C1 exon
GGTGACCAAGGAGACACCGGACCAAGG
Seq A exon
ATGGTCTTTCCTCGCTACGATCATGGCTACATCTCGGCCGATCAGCCCAGTTTCCAGAGGCGTATGCTGAAG
Seq C2 exon
GGTGATCAAGGACAAGCTGGCCCACCTGGACCTCCAGGCCCTCCTGGAGCACCCGGTGCACGAGGACCCCCAGGAAACACGGGGAAGGATGGTCCCCGTGGCCCACAAGGAGAGCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000095339_MULTIEX1-3/3=1-C2
Average complexity
ME(2-3[100=87])
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.970 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(16.0=100)
A:
PF0139113=Collagen=PD(0.1=0.0),PF0139113=Collagen=PU(1.8=4.2)
C2:
PF0139113=Collagen=FE(67.9=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGACCAAGGAGACACCGGA
R:
TTGCTCTCCTTGTGGGCCA
Band lengths:
143-215
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]