GgaEX0015694 @ galGal3
Exon Skipping
Gene
ENSGALG00000010521 | COL25A1
Description
NA
Coordinates
chr4:38828824-38842445:+
Coord C1 exon
chr4:38828824-38828924
Coord A exon
chr4:38841392-38841463
Coord C2 exon
chr4:38842338-38842445
Length
72 bp
Sequences
Splice sites
3' ss Seq
GACCTCACCTGCCTGATCAGATG
3' ss Score
5.22
5' ss Seq
AAGGTAGTG
5' ss Score
5.56
Exon sequences
Seq C1 exon
TTAGATGATGTAAGAGAGCTGGGTAGCACACAGATGCTGTGTTAAACCTATCATCTCATCTTTCCACTTTGCAGGGAGATCAAGGTGATCAGGGCCCTCGG
Seq A exon
ATGGTGTTTCCTAAAATCAATCATGGGTTTCTCTCTGCTGATCAGCAGCTCATTAAACGCCGCCTCATTAAG
Seq C2 exon
GGGGACCAAGGACAAGCTGGACCCCCTGGGCCTCCAGGGCCACCAGGACCCAGAGGTCCCCCAGGAGATACTGGCAAAGATGGTCCTCGAGGGATGCCTGGCATTCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010521-'0-3,'0-2,2-3
Average complexity
C2
Mappability confidence:
67%=100=50%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=NA A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NA
A:
PF0139113=Collagen=PU(0.1=0.0)
C2:
PF0139113=Collagen=FE(57.4=100),PF0139113=Collagen=PU(19.3=47.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGGTAGCACACAGATGCTGT
R:
CTCGAGGACCATCTTTGCCAG
Band lengths:
173-245
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]