DreEX0072589 @ danRer10
Exon Skipping
Gene
ENSDARG00000028824 | slc34a1a
Description
solute carrier family 34 (type II sodium/phosphate cotransporter), member 1a [Source:ZFIN;Acc:ZDB-GENE-101006-3]
Coordinates
chr14:818225-824352:-
Coord C1 exon
chr14:824236-824352
Coord A exon
chr14:820683-820807
Coord C2 exon
chr14:818225-819161
Length
125 bp
Sequences
Splice sites
3' ss Seq
TGTGTGTGTGTGTCCCTCAGGCA
3' ss Score
10.61
5' ss Seq
CAGGTACAC
5' ss Score
7.29
Exon sequences
Seq C1 exon
ATTTCCCGTATCCTCTAGGATGGCTGTCTGGATATCTGGCGATGCTGATGGGAGCAGGAATGACCTTCATCATCCAGAGCAGCTCCGTCTTCACCTCCGCCCTCACTCCACTCATCG
Seq A exon
GCATCGGTGTGATCAGTCTGAACCGAGCGTATCCTCTAACTCTGGGCTCCAACATCGGCACCACGACCACCGCCATCCTCGCTGCCCTCGCCAGCCCCAAAGAGAAGCTGCCCGCCGCCTGCCAG
Seq C2 exon
ATCGCGCTGTGTCATTTCTACTTCAACATCTTTGGCATTCTGCTGTGGTACCCGTTCCCGCTGACCCGTCTGCCCATCCGCATGGCCTCAGCTCTGGGCGAGCGCACCGCTAAGTACCGCTGGTTTGCAGTGCTGTACCTGCTGCTGTGTTTTCTGCTGCTGCCGTGTCTGGTGTTCGGCCTCTCTCTGGCCGGTTGGCAGGCTATGGTGGGCGTCGGAGCTCCGTTCGTCGCGCTCACGCTCTTTGTCCTGCTGGTAAACCTGATGCAGGCACGCAGTCCGGCTCATCTGCCTAAAACACTGCGCAGCTGGGACTTTCTGCCGCAGTGGATGCACTCGCTGAAGCCGCTAGACAAGCTGATCTCCAGGAGCACGGCTCTGTGCTGCAGCCCGCTGCGCATCAAGGACCCGGAGCCCCTGGTGGAGCCCTCAGACCTCCAGAAACCGGCCGATCAGTGTTTCGATAACCCTGCGCTAGAGGAGATTCCAGCAGAACCACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000028824-'16-14,'16-13,18-14
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0269010=Na_Pi_cotrans=FE(26.8=100)
A:
PF0269010=Na_Pi_cotrans=FE(29.7=100)
C2:
PF0269010=Na_Pi_cotrans=PD(22.7=17.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TATCTGGCGATGCTGATGGGA
R:
CAGCAGAAAACACAGCAGCAG
Band lengths:
244-369
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]