GgaEX1053285 @ galGal3
Exon Skipping
Gene
ENSGALG00000003075 | SLC34A1
Description
NA
Coordinates
chr13:10216437-10217504:+
Coord C1 exon
chr13:10216437-10216571
Coord A exon
chr13:10216684-10216808
Coord C2 exon
chr13:10216890-10217504
Length
125 bp
Sequences
Splice sites
3' ss Seq
AAGGGGTGCCTCTCCCACAGGCT
3' ss Score
6.92
5' ss Seq
CAGGTATGG
5' ss Score
9.99
Exon sequences
Seq C1 exon
TGTCTTGTGCCATGGCAGACCTCCCACACCCATTCAGCTGGCTCACCGGGTACTTCGCCATGGTGGTGGGCGCTGGGATGACCTTCGTGGTCCAGAGCAGCTCCGTCTTCACCTCAGCCATCACACCACTGATCG
Seq A exon
GCTTGGGGGTGATCAGCATTGAGCGTGCCTACCCGCTGACCCTGGGCTCCAACATTGGCACCACCACCACCGCCATCCTGGCCGCGCTGGCCAGCCCCGGGGACAAGCTGGCTAGCTCCTTCCAG
Seq C2 exon
ATCGCCCTCTGCCACTTCTTCTTCAACATCTCTGGCATCCTGCTGTGGTACCCGCTGCCCTTCACCCGCCTGCCCATCCGCATGGCCAAGGCGCTGGGCGAGCGCACGGCCAAGTACCGCTGGTTTGCCGTGCTGTACCTCATCATCTGCTTCCTCCTGCTGCCCTCCCTCATCTTCGGCATCTCCATGGCGGGCTGGCGGGTGCTGGTGGGGGTGGGCGCTCCTTTCCTCGGCCTCCTCTTCTTTGTGGGGCTGGTGAACGTGCTGCAGGCGCGCAGCCCTGGCCGCCTGCCCAAGTGGCTGCAGAGCTGGGACTTCCTCCCGGCCTGGATGCATTCGCTGCAGCCTCTCGACAGCCTCATCACACGCGCCACGCTCTGCTGCACCGACCGCTGCCGCAGCCCCGAGGGCTGGGATGAGCGTGAGGCCGCTGCCCGTGACAAGGCCAGACTGGGGCTGGACAACCCTGTGCTCTCCTACCCTGAGGAGATGCCCAGCCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003075-'16-24,'16-22,17-24=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0269010=Na_Pi_cotrans=FE(32.1=100)
A:
PF0269010=Na_Pi_cotrans=FE(29.3=100)
C2:
PF0269010=Na_Pi_cotrans=PD(22.1=24.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACCCATTCAGCTGGCTCAC
R:
GATGAGGTACAGCACGGCAAA
Band lengths:
253-378
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]