RnoEX0082275 @ rn6
Exon Skipping
Gene
ENSRNOG00000015262 | Slc34a1
Description
solute carrier family 34 member 1 [Source:RGD Symbol;Acc:3708]
Coordinates
chr17:9747752-9749949:-
Coord C1 exon
chr17:9749833-9749949
Coord A exon
chr17:9749584-9749636
Coord C2 exon
chr17:9747752-9748740
Length
53 bp
Sequences
Splice sites
3' ss Seq
CATTGGTACCACCACTACAGCCA
3' ss Score
2.59
5' ss Seq
CAGGTACAT
5' ss Score
7.79
Exon sequences
Seq C1 exon
ACTTCCCAGCCCCCTTCACTTGGGTCACAGGCTACTTTGCCATGGTGGTGGGCGCCAGCATGACGTTTGTTGTCCAGAGCAGTTCCGTGTTCACCTCAGCCATCACTCCGCTCATTG
Seq A exon
CCATCCTGGCAGCACTGGCCAGCCCCAGGGAGAAGCTCTCCAGCTCCTTTCAG
Seq C2 exon
ATTGCCCTCTGCCACTTCTTCTTCAACATCTCGGGCATCCTCCTGTGGTACCCGCTGCCCTGCACACGTCTGCCCATCCGCATGGCCAAGGCACTGGGCAAACGCACTGCCAAGTACCGCTGGTTTGCCGTCCTCTACCTCCTCGTGTGCTTCCTGCTCCTGCCCTCACTGGTGTTTGGCATTTCTATGGCAGGCTGGCAGGCTATGGTCGGTGTGGGCACACCCTTTGGGGCCCTGCTCGCCTTCGTGGTGCTTGTTAACGTCCTGCAGAGTCGAAGTCCCGGGCACCTCCCCAAGTGGCTGCAGACATGGGACTTCCTACCCCGCTGGATGCACTCTCTGCAGCCCCTGGATGGCCTTATCACAAGAGCCACCTTGTGCTATGCCAGGCCCGAGCCCCGTTCACCCCAACTTCCCCCCAGAGTCTTCCTGGAGGAGCTTCCTCCTGCCACGCCCTCTCCCCGCCTGGCACTGCCCGCTCACCACAATGCCACCCGGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000015262-'23-33,'23-32,24-33
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.024
Domain overlap (PFAM):
C1:
PF0269010=Na_Pi_cotrans=FE(27.9=100)
A:
PF0269010=Na_Pi_cotrans=FE(29.3=100)
C2:
PF0269010=Na_Pi_cotrans=PD(22.1=18.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGGGTCACAGGCTACTTTGC
R:
GGATGCCCGAGATGTTGAAGA
Band lengths:
138-191
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]