GgaEX1053285 @ galGal4
Exon Skipping
Gene
ENSGALG00000003075 | SLC34A1
Description
solute carrier family 34 (type II sodium/phosphate cotransporter), member 1 [Source:HGNC Symbol;Acc:HGNC:11019]
Coordinates
chr13:9451511-9452355:+
Coord C1 exon
chr13:9451511-9451627
Coord A exon
chr13:9451740-9451864
Coord C2 exon
chr13:9451946-9452355
Length
125 bp
Sequences
Splice sites
3' ss Seq
AAGGGGTGCCTCTCCCACAGGCT
3' ss Score
6.92
5' ss Seq
CAGGTATGG
5' ss Score
9.99
Exon sequences
Seq C1 exon
ACCTCCCACACCCATTCAGCTGGCTCACCGGGTACTTCGCCATGGTGGTGGGCGCTGGGATGACCTTCGTGGTCCAGAGCAGCTCCGTCTTCACCTCAGCCATCACACCACTGATCG
Seq A exon
GCTTGGGGGTGATCAGCATTGAGCGTGCCTACCCGCTGACCCTGGGCTCCAACATTGGCACCACCACCACCGCCATCCTGGCCGCGCTGGCCAGCCCCGGGGACAAGCTGGCTAGCTCCTTCCAG
Seq C2 exon
ATCGCCCTCTGCCACTTCTTCTTCAACATCTCTGGCATCCTGCTGTGGTACCCGCTGCCCTTCACCCGCCTGCCCATCCGCATGGCCAAGGCGCTGGGCGAGCGCACGGCCAAGTACCGCTGGTTTGCCGTGCTGTACCTCATCATCTGCTTCCTCCTGCTGCCCTCCCTCATCTTCGGCATCTCCATGGCGGGCTGGCGGGTGCTGGTGGGGGTGGGCGCTCCTTTCCTCGGCCTCCTCTTCTTTGTGGGGCTGGTGAACGTGCTGCAGGCGCGCAGCCCTGGCCGCCTGCCCAAGTGGCTGCAGAGCTGGGACTTCCTCCCGGCCTGGATGCATTCGCTGCAGCCTCTCGACAGCCTCATCACACGCGCCACGCTCTGCTGCACCGACCGCTGCCGCAGCCCCGAGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003075-'20-42,'20-40,21-42
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0269010=Na_Pi_cotrans=FE(27.9=100)
A:
PF0269010=Na_Pi_cotrans=FE(29.3=100)
C2:
PF0269010=Na_Pi_cotrans=PD(22.1=22.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACCCATTCAGCTGGCTCAC
R:
GATGAGGTACAGCACGGCAAA
Band lengths:
253-378
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]