DreEX0072594 @ danRer10
Exon Skipping
Gene
ENSDARG00000054658 | slc34a1b
Description
solute carrier family 34 (type II sodium/phosphate cotransporter), member 1b [Source:ZFIN;Acc:ZDB-GENE-101006-4]
Coordinates
chr21:32987617-32990984:-
Coord C1 exon
chr21:32990789-32990984
Coord A exon
chr21:32988541-32988619
Coord C2 exon
chr21:32987617-32987784
Length
79 bp
Sequences
Splice sites
3' ss Seq
TCTAAATTTATTATCAACAGATC
3' ss Score
7.38
5' ss Seq
AATGTAAGT
5' ss Score
8.62
Exon sequences
Seq C1 exon
AGCTTTTGCTGGTGCCACAGTGCACGATTGCTTTAACTGGCTGTCAGTGCTGGTGCTGCTGCCGCTGGAAGCCATCACAGGCATGATGAGGTTAATGTCGGAGGCAATTGTTGAAAGTTTCAATATCGTGACCGGAGAGAAGGGTCCAGAGCTGCTGAAAGTCATCACAGAACCTTTCACCAAACGTATAATTCAG
Seq A exon
ATCCAAAAAAATGCTTCTTTTGTGCCTTCTGAAAACTCAACAGTGCTAACCACATCTCTCCACATGAATGCTGAAAAAT
Seq C2 exon
GCACTCATCTATTTGTGGAGACGAGATTGTCTGATCTGGCTGTGGGGTTGATTCTGCTGGTTTGCTCGCTGCTGGTTCTGTGCACCTGCCTCCTGCTGCTGGTTAAGCTCCTCAACTCCCTCCTCCAGGGACAAGTGGCCAAGGCCATCCAAAAAGTCATCAACACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000054658_MULTIEX1-2/2=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0269010=Na_Pi_cotrans=PD(25.9=54.5)
A:
NO
C2:
PF0269010=Na_Pi_cotrans=PU(19.1=47.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TATCGTGACCGGAGAGAAGGG
R:
CTTAACCAGCAGCAGGAGGC
Band lengths:
180-259
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]