HsaEX6101409 @ hg38
Exon Skipping
Gene
ENSG00000131183 | SLC34A1
Description
solute carrier family 34 member 1 [Source:HGNC Symbol;Acc:HGNC:11019]
Coordinates
chr5:177389647-177394195:+
Coord C1 exon
chr5:177389647-177390484
Coord A exon
chr5:177393694-177393763
Coord C2 exon
chr5:177394028-177394195
Length
70 bp
Sequences
Splice sites
3' ss Seq
TCACCCTCCTCCTGATCTAGGCT
3' ss Score
9.44
5' ss Seq
AATGTAAGT
5' ss Score
8.62
Exon sequences
Seq C1 exon
TTTCATCCCCTTTCTGGGACAGCGCCCCGAAGGAGTGTGACTCACACAGCAGTGGATGTGCTTGGTCTTGCAAAGTGTGAAGTGCGTCCTGGCTCTTCCTGCCCAAAGACGGGCCACAGAGTCTCCCCGTGCTCCCTTCCAACCTGTTCCCATTGACGCCAACTTTCACCATGCTGGACCTGAACCAGCCCGAAACAGTCTCCAGGGAAGCTATGCACCAGGGAGAGGAGGCAAGTCCAAGGCCTACCAGATGGGGAAAGCAGCAGCAGCGGCAGTTGAGTGATCAGACACTTGAGTCTCCCGGGACCCTGACACCGTCCTGGGAATCACCTTCTTATGTGGCCACACTGTGGACTGTCAACTATACCTGCCTGGATTAAACAAGCATCTTTTGAGGACTTGCAACCTGGGAGGCAGGGATTATCACGTCCCCATTTTACAGACGAGGAGCACTGAGCCCCAGAGAAGTGCAGTGGCTTGCCCAAGTCCATGTAATTGAG
Seq A exon
GCTCCCACCTCCATGTCCAGAGCAGAGGCCAACTCCAGCCAGACCCTTGGAAATGCCACCATGGAGAAAT
Seq C2 exon
GCAACCACATCTTTGTGGACACTGGCCTACCGGACCTGGCTGTGGGGCTCATCCTGCTGGCAGGATCCCTGGTGCTGCTGTGCACCTGCCTCATCCTCCTAGTCAAGATGCTCAACTCCCTGCTCAAGGGCCAAGTGGCCAAGGTCATCCAGAAGGTCATCAATACGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000131183-'13-18,'13-17,16-18=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.250 A=0.125 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0269010=Na_Pi_cotrans=PU(19.1=47.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCTTGCCCAAGTCCATGTAA
R:
CTTCTGGATGACCTTGGCCAC
Band lengths:
181-251
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains