RnoEX0082269 @ rn6
Exon Skipping
Gene
ENSRNOG00000015262 | Slc34a1
Description
solute carrier family 34 member 1 [Source:RGD Symbol;Acc:3708]
Coordinates
chr17:9752975-9759061:-
Coord C1 exon
chr17:9758966-9759061
Coord A exon
chr17:9753375-9753438
Coord C2 exon
chr17:9752975-9753142
Length
64 bp
Sequences
Splice sites
3' ss Seq
TCACCTTCCTCTGAATTTAGGCT
3' ss Score
8.59
5' ss Seq
AATGTAAGT
5' ss Score
8.62
Exon sequences
Seq C1 exon
CTGGACAAGTCTGTGATTACCAGCATTGCCGTGGGGGATGAGTCCCTGAGGAATCACAGTCTCATTCGGATTTGGTGTCAACCAGAGACAAAAGAG
Seq A exon
GCTTCCACTTCTATGTCCAGGGTAGAGGCCATTGGCAGCCTTGCAAACACCACCATGGAGAAAT
Seq C2 exon
GCAACCATATCTTCGTGGATACTGGGCTGCCCGACCTGGCCGTGGGGCTCATTCTGCTGGCGGGCTCCCTGGTGGTCCTGTGCACTTGTCTTATCCTCCTCGTCAAGATGCTCAACTCTCTGCTGAAGGGCCAAGTGGCCAATGTCATCCAGAAGGTCATCAACACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000015262-'13-24,'13-21,18-24
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0269010=Na_Pi_cotrans=PU(19.3=47.4)
Main Skipping Isoform:
ENSRNOT00000033749fB13633
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTCCCTGAGGAATCACAGTCT
R:
AAGACAAGTGCACAGGACCAC
Band lengths:
148-212
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]