DreEX0072588 @ danRer10
Exon Skipping
Gene
ENSDARG00000028824 | slc34a1a
Description
solute carrier family 34 (type II sodium/phosphate cotransporter), member 1a [Source:ZFIN;Acc:ZDB-GENE-101006-3]
Coordinates
chr14:824736-828368:-
Coord C1 exon
chr14:828273-828368
Coord A exon
chr14:826787-826904
Coord C2 exon
chr14:824736-824903
Length
118 bp
Sequences
Splice sites
3' ss Seq
CTTTTTCGTTCTGTGTGCAGTCC
3' ss Score
9.31
5' ss Seq
AATGTGAGT
5' ss Score
7.8
Exon sequences
Seq C1 exon
CTGGATAAATCCGTCATCACAGGCATTGCTCTGGGCGACGAGTCCATGCGGAATCACAGCCTCATCAAAGTCTGGTGCAAGTCCTCCGTCTTGGTG
Seq A exon
TCCTCGGTGAATGTGACGCATGCGGCCGTACGAAACTGCACTGGACTGCACTGTGGGAGGGATGGAGACCTGACCTGGATCACTCAGAATATCACCACACACATCAACACGGAGAAAT
Seq C2 exon
GTCGTCATGTGTTCGTGGATACAGGGCTGTCAGATCTGGCTGTGGGACTCATTCTGCTGGCCGGATCTCTGATGCTGCTGTGCTCCTGCCTGCTGTTCATCGTTAAAGTGCTCAACTCACTTCTCAAAGGTCAAGTGGCCAAGGTCATCGAAGGGGTCATCAACACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000028824-'11-9,'11-7,12-9
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0269010=Na_Pi_cotrans=PU(19.6=47.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTCATCACAGGCATTGCTCT
R:
TGATGACCCCTTCGATGACCT
Band lengths:
247-365
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]