BtaEX6039911 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000020351 | SLC34A1
Description
Bos taurus solute carrier family 34 (sodium phosphate), member 1 (SLC34A1), mRNA. [Source:RefSeq mRNA;Acc:NM_001103223]
Coordinates
chr7:40242804-40249688:+
Coord C1 exon
chr7:40242804-40242899
Coord A exon
chr7:40249195-40249264
Coord C2 exon
chr7:40249521-40249688
Length
70 bp
Sequences
Splice sites
3' ss Seq
GACCTCTCCTCTTAATCTAGGTT
3' ss Score
8.79
5' ss Seq
AATGTGAGT
5' ss Score
7.8
Exon sequences
Seq C1 exon
CTGGACAAGTCTGTGATTACCAGCCTTGCCTCGGGGGACGAGTCCCTGAGAAATCACAGCCTCATCCGGGTCTGGTGTTACCCAGACCCCACAGAG
Seq A exon
GTTCCCACTCCTATGCCCAGGGCAGAGGCCAACACCAGCCGGATGCTCAGGAATGCCACCCTGGAGAAAT
Seq C2 exon
GCAACCACATCTTTGTGGACACGGGGCTGCCTGACCTAGCTGTGGGGCTCATCCTGCTGGCTGGCTCCCTGGCACTCCTGTGCACCTGTCTCATCCTCCTTGTCAAGATGCTCAACTCTCTGCTCAAGGGCCAGGTGGCCAAGGTCATTCAGAAGGTTATCAACACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020351-'9-19,'9-18,14-19=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.583 C2=0.088
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0269010=Na_Pi_cotrans=PU(19.1=47.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTTACCCAGACCCCACAGAG
R:
CTGAATGACCTTGGCCACCTG
Band lengths:
173-243
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]