DreEX0073094 @ danRer10
Exon Skipping
Gene
ENSDARG00000073952 | slc4a7
Description
solute carrier family 4, sodium bicarbonate cotransporter, member 7 [Source:ZFIN;Acc:ZDB-GENE-140106-104]
Coordinates
chr16:42805088-42807020:-
Coord C1 exon
chr16:42806859-42807020
Coord A exon
chr16:42806670-42806783
Coord C2 exon
chr16:42805088-42805249
Length
114 bp
Sequences
Splice sites
3' ss Seq
TCAGCTTCTGTCCTCTGCAGGTC
3' ss Score
11.33
5' ss Seq
GAGGTACTC
5' ss Score
6.43
Exon sequences
Seq C1 exon
GATTGCAGGGATCTTCATGGCGAGTTTGTGGGTCCTGCCTGTGGACATAATGGCCCGTACATCCCTGATGTGTTGTTCTGGTCGGTCATTCTCTTCTTCACCACTTTCTTCCTCTCATCCTTCCTCAAGCAGTTCAAGACCAAGCGCTATTTCCCCACTAAG
Seq A exon
GTCCGCTCTTCCATCAGTGACTTTGCAGTTTTTCTAACCATCATGATCATGGTCTTGGTGGATTATTTAGTGGGTATCCCCTCTCCTAAATTGCACGTCCCAGATAGATTTGAG
Seq C2 exon
CCCACCTCTAAGAATCGGGGTTGGCTTATATCTCCTCTGGGGGATAATCCCACATGGACACTGTTTGCAGCCGCTATTCCTGCCCTCCTGTGCACCATCCTCATCTTCATGGACCAGCAGATCACCGCTGTCATCATCAACCGCAAAGAACACAAGCTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000073952-'24-22,'24-21,25-22
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0095516=HCO3_cotransp=FE(10.5=100)
A:
PF0095516=HCO3_cotransp=FE(7.4=100)
C2:
PF0095516=HCO3_cotransp=FE(10.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTTCATGGCGAGTTTGTGGG
R:
AGATGAGGATGGTGCACAGGA
Band lengths:
257-371
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]