GgaEX1053605 @ galGal4
Exon Skipping
Gene
ENSGALG00000011405 | SLC4A7
Description
solute carrier family 4, sodium bicarbonate cotransporter, member 7 [Source:HGNC Symbol;Acc:HGNC:11033]
Coordinates
chr2:39030261-39032170:-
Coord C1 exon
chr2:39032009-39032170
Coord A exon
chr2:39030843-39030956
Coord C2 exon
chr2:39030261-39030422
Length
114 bp
Sequences
Splice sites
3' ss Seq
ACAGGTTTTTTTGTTTATAGGTG
3' ss Score
8.12
5' ss Seq
GAAGTAAGA
5' ss Score
6.42
Exon sequences
Seq C1 exon
GAATGTTTAGAATTTCATGGTGTGTTTCATGGATCTGCTTGTGGCCATCATGGACCATATATTCCAGATGTTCTCTTCTGGTCTGTCATATTATTCTTTACAACATTTTTCCTCTCCTCTTTCCTTAAGCAGTTCAAGACCAAGCGCTATTTCCCAACTAAG
Seq A exon
GTGCGTTCTACGATCAGTGACTTTGCAGTATTTCTGACGATTGTAATCATGGTTTTGATTGACTATCTTGTAGGAGTGCCATCTCCTAAGCTTCATGTTCCAGAGAAATTTGAA
Seq C2 exon
CCCACACATAAGGACCGAGGGTGGTTCATAGACCCTCTTGGAGGCAATCCTTGGTGGACGCTCCTGGTAGCTGCTGTTCCTGCTTTACTCTGTACCATTCTCATTTTCATGGATCAACAAATAACAGCTGTTATTATAAACAGAAAAGAGCATAAGCTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011405-'48-43,'48-39,50-43
Average complexity
S
Mappability confidence:
100%=80=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0095516=HCO3_cotransp=FE(10.3=100)
A:
PF0095516=HCO3_cotransp=FE(7.2=100)
C2:
PF0095516=HCO3_cotransp=FE(10.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGTGTGTTTCATGGATCTGCT
R:
TGGTACAGAGTAAAGCAGGAACA
Band lengths:
242-356
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]