RnoEX6051282 @ rn6
Exon Skipping
Gene
ENSRNOG00000005957 | Slc4a7
Description
solute carrier family 4 member 7 [Source:RGD Symbol;Acc:621208]
Coordinates
chr15:11852031-11854570:-
Coord C1 exon
chr15:11854409-11854570
Coord A exon
chr15:11853773-11853886
Coord C2 exon
chr15:11852031-11852192
Length
114 bp
Sequences
Splice sites
3' ss Seq
TATTTATATTATTACTATAGGTG
3' ss Score
6.84
5' ss Seq
GAGGTAAGT
5' ss Score
11.08
Exon sequences
Seq C1 exon
GAGTGTAAGACCTTCCACGGTATGTTTGTGGGATCAGCTTGTGGGCCTCACGGGCCTTATGTTCCCGATGTGCTCTTCTGGTGTGTCGTCTTGTTTTTCACAACGTTCTTTCTGTCTTCATTCCTCAAGCAGTTTAAGACCAAGAGATATTTTCCTACTAAG
Seq A exon
GTGCGATCAACAATCAGTGACTTTGCTGTATTTCTCACAATAGTAATAATGGTTGCAATTGACTACCTTGTAGGAATTCCATCTCCTAAACTTCATGTTCCTGAAAAGTTTGAG
Seq C2 exon
CCTACTGATCCAAGCAGGGGCTGGATCATAAGCCCTTTGGGAGATAACCCTTGGTGGACCTTACTAATTGCAGCTGTTCCAGCTCTCCTTTGTACCATTCTCATCTTCATGGACCAGCAGATCACAGCTGTGATCATCAACAGGAAAGAACACAAACTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005957-'28-31,'28-29,29-31=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0095516=HCO3_cotransp=FE(10.3=100)
A:
PF0095516=HCO3_cotransp=FE(7.2=100)
C2:
PF0095516=HCO3_cotransp=FE(10.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGGGCCTTATGTTCCCGAT
R:
AGCTGTGATCTGCTGGTCCAT
Band lengths:
242-356
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]