DreEX0073455 @ danRer10
Exon Skipping
Gene
ENSDARG00000004246 | slit2
Description
slit homolog 2 (Drosophila) [Source:ZFIN;Acc:ZDB-GENE-010306-3]
Coordinates
chr1:23097690-23158186:+
Coord C1 exon
chr1:23097690-23097761
Coord A exon
chr1:23104218-23104289
Coord C2 exon
chr1:23158115-23158186
Length
72 bp
Sequences
Splice sites
3' ss Seq
GCGTGTGTCTGTGTTTGCAGGCG
3' ss Score
8.96
5' ss Seq
ACTGTGAGT
5' ss Score
7.94
Exon sequences
Seq C1 exon
GCAGTTAATGGAGAACAAGATCAGTTCAATTGAAAGAGGGGCATTTCAGGATCTACAAGAGCTGGAAAGACT
Seq A exon
GCGTCTCAACAGGAATAATCTTCAGGTTCTTCCGGAGTTGCTGTTTCTGGGCACGACCAAACTCTTCAGACT
Seq C2 exon
GGACCTGAGTGAAAATCAAATCCAGGGGATTCCCAGAAAAGCCTTCAGAGGATCTACAGAGATCAAAAACCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000004246_MULTIEX1-2/2=1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF138551=LRR_8=FE(42.1=100)
A:
PF138551=LRR_8=PD(5.3=12.0)
C2:
PF138551=LRR_8=PU(8.2=20.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGTTAATGGAGAACAAGATCAGT
R:
ATCTCTGTAGATCCTCTGAAGGCT
Band lengths:
135-207
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]