HsaEX6083772 @ hg19
Exon Skipping
Gene
ENSG00000145147 | SLIT2
Description
slit homolog 2 (Drosophila) [Source:HGNC Symbol;Acc:11086]
Coordinates
chr4:20259491-20469446:+
Coord C1 exon
chr4:20259491-20259562
Coord A exon
chr4:20270433-20270504
Coord C2 exon
chr4:20469375-20469446
Length
72 bp
Sequences
Splice sites
3' ss Seq
TGTTTTTGTTTTCTCAAAAGGCG
3' ss Score
7.7
5' ss Seq
GCTGTAAGT
5' ss Score
8.56
Exon sequences
Seq C1 exon
TCAGCTTATGGAGAATAAGATTAGCACCATTGAAAGAGGAGCATTCCAGGATCTTAAAGAACTAGAGAGACT
Seq A exon
GCGTTTAAACAGAAATCACCTTCAGCTGTTTCCTGAGTTGCTGTTTCTTGGGACTGCGAAGCTATACAGGCT
Seq C2 exon
TGATCTCAGTGAAAACCAAATTCAGGCAATCCCAAGGAAAGCTTTCCGTGGGGCAGTTGACATAAAAAATTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000145147-'3-4,'3-3,4-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF138551=LRR_8=FE(39.3=100)
A:
PF138551=LRR_8=PD(11.5=28.0)
C2:
PF138551=LRR_8=PD(11.5=28.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAGAATAAGATTAGCACCATTGA
R:
TTTATGTCAACTGCCCCACGG
Band lengths:
130-202
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)