HsaEX6083772 @ hg38
Exon Skipping
Gene
ENSG00000145147 | SLIT2
Description
slit guidance ligand 2 [Source:HGNC Symbol;Acc:HGNC:11086]
Coordinates
chr4:20257868-20467823:+
Coord C1 exon
chr4:20257868-20257939
Coord A exon
chr4:20268810-20268881
Coord C2 exon
chr4:20467752-20467823
Length
72 bp
Sequences
Splice sites
3' ss Seq
TGTTTTTGTTTTCTCAAAAGGCG
3' ss Score
7.7
5' ss Seq
GCTGTAAGT
5' ss Score
8.56
Exon sequences
Seq C1 exon
TCAGCTTATGGAGAATAAGATTAGCACCATTGAAAGAGGAGCATTCCAGGATCTTAAAGAACTAGAGAGACT
Seq A exon
GCGTTTAAACAGAAATCACCTTCAGCTGTTTCCTGAGTTGCTGTTTCTTGGGACTGCGAAGCTATACAGGCT
Seq C2 exon
TGATCTCAGTGAAAACCAAATTCAGGCAATCCCAAGGAAAGCTTTCCGTGGGGCAGTTGACATAAAAAATTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000145147-'4-18,'4-6,6-18=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF138551=LRR_8=PU(33.3=95.5)
A:
PF138551=LRR_8=PD(11.5=28.0)
C2:
PF138551=LRR_8=PD(27.0=68.0),PF138551=LRR_8=PU(8.2=20.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAGAATAAGATTAGCACCATTGA
R:
TTTATGTCAACTGCCCCACGG
Band lengths:
130-202
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains