BtaEX0033581 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000005108 | SLIT2
Description
slit homolog 2 (Drosophila) [Source:HGNC Symbol;Acc:HGNC:11086]
Coordinates
chr6:41240646-41487368:+
Coord C1 exon
chr6:41240646-41240717
Coord A exon
chr6:41252779-41252850
Coord C2 exon
chr6:41487297-41487368
Length
72 bp
Sequences
Splice sites
3' ss Seq
TGTTTTGTTTTTCTCAAAAGGCG
3' ss Score
8.24
5' ss Seq
GCTGTAAGT
5' ss Score
8.56
Exon sequences
Seq C1 exon
TCAGCTTATGGAGAATAAGATTACCACCATTGAAAGAGGAGCATTCCAGGATCTTAAAGAACTGGAGAGACT
Seq A exon
GCGTTTAAACAGAAATCACCTTCAGCTGTTTCCTGAGTTGCTGTTTCTTGGGACTTCGAAGCTATACAGGCT
Seq C2 exon
TGACCTCAGTGAAAACCAGATTCAGGCAATTCCAAGGAAAGCTTTTCGTGGGGCAGTTGATATTAAAAATCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000005108-'5-9,'5-6,6-9
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF138551=LRR_8=FE(39.3=100)
A:
PF138551=LRR_8=PD(11.5=28.0)
C2:
PF138551=LRR_8=PU(8.2=20.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAGAATAAGATTACCACCATTGA
R:
AGATTTTTAATATCAACTGCCCCACG
Band lengths:
136-208
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development