DreEX0073491 @ danRer10
Exon Skipping
Gene
ENSDARG00000034268 | slit3
Description
slit homolog 3 (Drosophila) [Source:ZFIN;Acc:ZDB-GENE-010306-4]
Coordinates
chr14:24319476-24443399:-
Coord C1 exon
chr14:24443328-24443399
Coord A exon
chr14:24441496-24441567
Coord C2 exon
chr14:24319476-24319547
Length
72 bp
Sequences
Splice sites
3' ss Seq
TTGTCCTCTCTTCCTTACAGCCG
3' ss Score
11.28
5' ss Seq
CCTGTAAGT
5' ss Score
7.52
Exon sequences
Seq C1 exon
ACATCTAGAGAACAATCAAATAAGTGTGATTGAAAGAGGAGCATTTGAGGGTCTCAAACAACTTGAGAGAAT
Seq A exon
CCGCCTGAACCGGAACCGGCTTCAGGTCCTGCCGGAGCTGCTGTTCCAATCCACAACCAAGCTGAGCCGCCT
Seq C2 exon
GGACCTGAGCGAGAATCAGATTCAGGCTGTTCCTCGTAAGGCTTTCCGAGGGATCACCACTGTCAAGAACCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000034268_MULTIEX1-1/6=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF138551=LRR_8=FE(40.0=100)
A:
PF138551=LRR_8=PD(10.0=24.0),PF127992=LRR_4=PU(9.6=20.0)
C2:
PF127992=LRR_4=FE(46.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAATAAGTGTGATTGAAAGAGGAGC
R:
GGTTCTTGACAGTGGTGATCCC
Band lengths:
127-199
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]